Pubcompare utilizes artificial intelligence to offer scientists a comprehensive platform featuring a vast database of reliable experimental protocols. This AI-powered tool facilitates swift comparison of protocol sections across various publications, enhancing reproducibility evaluation through in-protocol citations. Similar to PubMed and Web of Science for abstract searches, Pubcompare stands out by integrating AI to detect and compare protocols based on entered keywords. It highlights critical steps and identifies similar protocols efficiently, utilizing advanced semantic analysis to include synonyms and variations of keywords. One of its key functionalities is assessing protocol reproducibility by analyzing in-protocol citations, aiding scientists in identifying highly referenced methods. Additionally, Pubcompare can uncover relevant methods behind paywalls via shortcut citations within protocols. While providing robust AI tools for protocol comparison, detection, and evaluation, Pubcompare empowers scientists to tailor their protocols based on comprehensive and accessible information.